Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10053928

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10053928
Fusion NameHBV-NC_000004.12:95386350 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput HBV integration sequencing method
Wet AssayYes
Sample ID-
Sample NamePt_0501_NT
Sample TypeTumor
Age58
GenderMale
Disease Information
Disease Name-
Disease Abbreviation-
Cancer-
Literature
PubMed ID37400627
JournalCommunications Biology
Published Year2023
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human ChromosomeNC_000004.12
Cytogenetic Band
Human Strand-
Human Integration Location Type
Hg19 Start-
Hg19 End-
Hg38 Start95386350
Hg38 End95386262
Junction SequenceGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATAAGTAACTAACCTGCACAATG
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameHBV genotype D
Virus Genome AccessionNC_003977.2
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182 bp
Virus Breakpoint178
Virus Breakpoint239
Virus Gene NamepreS1/preS2/S
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-