| Basic Information ▶ | |
| VISDB ID | TVIS10053975 |
|---|---|
| Fusion Name | HBV-NC_000001.11:44969975 integration |
| Validated | No |
| Curated Way | Curated |
| Method | High-throughput HBV integration sequencing method |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | Pt_0501_T |
| Sample Type | Tumor |
| Age | 58 |
| Gender | Male |
| Disease Information ▶ | |
| Disease Name | Hepatocellular Carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 37400627 |
| Journal | Communications Biology |
| Published Year | 2023 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | NC_000001.11 |
| Cytogenetic Band | NA |
| Human Strand | + |
| Human Integration Location Type | intergenic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 44969975 |
| Hg38 End | 44970011 |
| Junction Sequence | CACCCAGGGCCTGGGAGAATGAATGAACCAATAATCT |
| Target Gene ▶ | |
| Target Gene | - |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV genotype D |
| Virus Genome Accession | NC_003977.2 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus (strain ayw) genome |
| Virus Genome Length | 3182 bp |
| Virus Breakpoint1 | 1871 |
| Virus Breakpoint2 | 2070 |
| Virus Gene Name | PreCore/Core |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000070785.18 |
| Gene Name | EIF2B3 |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000360403.7, Transcript 2: ENST00000620860.4, Transcript 3: ENST00000852379.1, Transcript 4: ENST00000913758.1, Transcript 5: ENST00000852380.1, Transcript 6: ENST00000852383.1, Transcript 7: ENST00000949285.1, Transcript 8: ENST00000852381.1, Transcript 9: ENST00000852382.1, Transcript 10: ENST00000852384.1, Transcript 11: ENST00000913759.1, Transcript 12: ENST00000372183.7, Transcript 13: ENST00000480675.5, Transcript 14: ENST00000477953.5, Transcript 15: ENST00000372182.6, Transcript 16: ENST00000487532.5 |
| SpliceAI Score | |
| Delta Scores | Acceptor Gain: 0.000 | Acceptor Loss: 0.670 | Donor Gain: 0.000 | Donor Loss: 0.550 |
| Delta Score Max | 0.670 |
| Delta Position at Max | 69 |
| Delta Score Flag | RECOMMENDED |
| Gene | EIF2B3 |
| AlphaGenome Analysis | |
| Chromosome | chr1 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D