| Basic Information ▶ | |
| VISDB ID | TVIS10054461 |
|---|---|
| Fusion Name | HBV-NC_000012.12:96101967 integration |
| Validated | No |
| Curated Way | Curated |
| Method | High-throughput HBV integration sequencing method |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | Pt_0501_T |
| Sample Type | Tumor |
| Age | 58 |
| Gender | Male |
| Disease Information ▶ | |
| Disease Name | Hepatocellular Carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 37400627 |
| Journal | Communications Biology |
| Published Year | 2023 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | NC_000012.12 |
| Cytogenetic Band | NA |
| Human Strand | + |
| Human Integration Location Type | intergenic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 96101967 |
| Hg38 End | 96102092 |
| Junction Sequence | TATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACCGACACTATCCCACTAGTGATCAGCATGGGAGTTTTGACATGCTCTGTTTCTGATCTGGGCTGATTCACCCCTCCTTAGGCAACCTGGTGG |
| Target Gene ▶ | |
| Target Gene | - |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | HBV genotype D |
| Virus Genome Accession | NC_003977.2 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus (strain ayw) genome |
| Virus Genome Length | 3182 bp |
| Virus Breakpoint1 | 62 |
| Virus Breakpoint2 | 163 |
| Virus Gene Name | preS1/preS2/S |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Transcript | Transcript 1: ENST00000773161.1, Transcript 2: ENST00000773160.1, Transcript 3: ENST00000773156.1, Transcript 4: ENST00000480166.3 |
| Transcript 1 Gene Id | ENSG00000289949.2 |
| Transcript 1 Gene Name | ENSG00000289949 |
| Transcript 1 Region | intron |
| Transcript 1 Impact | intronic_insertion |
| Transcript 2 Gene Id | ENSG00000289949.2 |
| Transcript 2 Gene Name | ENSG00000289949 |
| Transcript 2 Region | intron |
| Transcript 2 Impact | intronic_insertion |
| Transcript 3 Gene Id | ENSG00000289949.2 |
| Transcript 3 Gene Name | ENSG00000289949 |
| Transcript 3 Region | intron |
| Transcript 3 Impact | intronic_insertion |
| Transcript 4 Gene Id | ENSG00000277062.1 |
| Transcript 4 Gene Name | RN7SL88P |
| Transcript 4 Region | exon_non_coding |
| Transcript 4 Impact | noncoding_exon_insertion |
| AlphaGenome Analysis | |
| Chromosome | chr12 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D