Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10054799

Genomic Region Visualization (IGV)

Basic Information ▶
VISDB IDTVIS10054799
Fusion NameHBV-NC_000021.9:44321593 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput HBV integration sequencing method
Wet AssayYes
Sample ID-
Sample NamePt_0502_NT
Sample TypeTumor
Age72
GenderMale
Disease Information ▶
Disease Name-
Disease Abbreviation-
Cancer-
Literature ▶
PubMed ID37400627
JournalCommunications Biology
Published Year2023
Human Genome ▶
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human ChromosomeNC_000021.9
Cytogenetic BandNA
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start-
Hg19 End-
Hg38 Start44321593
Hg38 End44321696
Junction SequenceGTGTGCTGGGCAGCGTCCAGGCTGCTGGCAGGGCCTGGCCCCTTTTTCCAGAACCTGCCGGCCTGCTGACCTCCTGTGCAGGTTGGGGGTCCCCTCCCCGTCTG
Target Gene ▶
Target Gene-
Nearby Gene-
Distance-
Virus Information ▶
Virus NameHepatitis B virus
Virus Subtype NameHBV genotype D
Virus Genome AccessionNC_003977.2
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182 bp
Virus Breakpoint11489
Virus Breakpoint21542
Virus Gene NameX
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-
Predicted VIS Effect ▶
Gene IdENSG00000141959.18
Gene NamePFKL
TranscriptTranscript 1: ENST00000885166.1, Transcript 2: ENST00000916368.1, Transcript 3: ENST00000885165.1, Transcript 4: ENST00000885167.1, Transcript 5: ENST00000885169.1, Transcript 6: ENST00000885168.1, Transcript 7: ENST00000946328.1, Transcript 8: ENST00000885170.1, Transcript 9: ENST00000885174.1, Transcript 10: ENST00000885173.1, Transcript 11: ENST00000916369.1, Transcript 12: ENST00000885172.1, Transcript 13: ENST00000885171.1, Transcript 14: ENST00000946329.1, Transcript 15: ENST00000946330.1, Transcript 16: ENST00000397961.6, Transcript 17: ENST00000885176.1, Transcript 18: ENST00000349048.9, Transcript 19: ENST00000885175.1, Transcript 20: ENST00000885177.1, Transcript 21: ENST00000946331.1, Transcript 22: ENST00000946337.1, Transcript 23: ENST00000946332.1, Transcript 24: ENST00000885178.1, Transcript 25: ENST00000885179.1, Transcript 26: ENST00000946333.1, Transcript 27: ENST00000946335.1, Transcript 28: ENST00000946334.1, Transcript 29: ENST00000946336.1, Transcript 30: ENST00000885182.1, Transcript 31: ENST00000885185.1, Transcript 32: ENST00000946338.1, Transcript 33: ENST00000885183.1, Transcript 34: ENST00000885181.1, Transcript 35: ENST00000885180.1, Transcript 36: ENST00000946339.1, Transcript 37: ENST00000885184.1, Transcript 38: ENST00000466134.5, Transcript 39: ENST00000474114.5, Transcript 40: ENST00000498841.5, Transcript 41: ENST00000460020.5, Transcript 42: ENST00000467315.5, Transcript 43: ENST00000460521.5, Transcript 44: ENST00000495274.1
Transcript 1 Regionintron
Transcript 1 Impactintronic_insertion
Transcript 2 Regionintron
Transcript 2 Impactintronic_insertion
Transcript 3 Regionintron
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Transcript 37 Regionintron
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Transcript 38 Regionintron
Transcript 38 Impactintronic_insertion
Transcript 39 Regionexon_non_coding
Transcript 39 Impactnoncoding_exon_insertion
Transcript 40 Regionintron
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Transcript 41 Regionintron
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Transcript 42 Regionintron
Transcript 42 Impactintronic_insertion
Transcript 43 Regionexon_non_coding
Transcript 43 Impactnoncoding_exon_insertion
Transcript 44 Regionpromoter
Transcript 44 Impactpromoter_insertion
AlphaGenome Analysis
Windowchr21:44256057-44387129
RNA-seq Change (±2kb)Mean: 0.006921642925590277 | Peak: 15.6788330078125
ATAC Change (±2kb)Mean: -1.4980190826463513e-05 | Peak: 4.374698638916016
InterpretationRNA-seq: minimal change 2.6% | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change -0.0%
Visualization
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