Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10057472

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10057472
Fusion NameHBV-GRXCR1 integration
ValidatedNo
Curated WayCurated
MethodCapture-based next-generation sequencing
Wet AssayYes
Sample ID-
Sample NameIg18206
Sample TypeTumor
Age-
Gender-
Disease Information
Disease Name-
Disease Abbreviation-
Cancer-
Literature
PubMed ID37941707
JournalJMA Journal
Published Year2023
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human Chromosomechr4
Cytogenetic Band
Human Strand-
Human Integration Location Type
Hg19 Start-
Hg19 End-
Hg38 Start42,983,857
Hg38 End42,983,858
Junction Sequence-
Target Gene
Target GeneGRXCR1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAB033550.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus DNA, complete genome
Virus Genome Length3215 bp
Virus Breakpoint11,834
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-