| Basic Information ▼ | |
| VISDB ID | TVIS10062390 |
|---|---|
| Fusion Name | HBV-RPA3 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Rapid Amplification of Integration Site without Interference by Genomic DNA contamination (RAISING) method and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | HepG2-hNTCP-C4 cells |
| Sample Type | Cell line |
| Age | - |
| Gender | - |
| Disease Information ▼ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▼ | |
| PubMed ID | 38051537 |
| Journal | Hepatology Communications |
| Published Year | 2023 |
| Human Genome ▼ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr7 |
| Cytogenetic Band | p21.3 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 7705852 |
| Hg38 End | 7705852 |
| Junction Sequence | - |
| Target Gene ▼ | |
| Target Gene | RPA3, ENSG00000308992, UMAD1, ENSG00000283549 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▼ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | Genotype D |
| Virus Genome Accession | EU054331, X02763, GQ477489, AB219428, D00331, GQ924620, GQ358158, AB246345, and U95551 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | 3180 |
| Virus Breakpoint2 | - |
| Virus Gene Name | P, S |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D