Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10062582

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10062582
Fusion NameHBV-chr1:218637740 integration
ValidatedNo
Curated WayCurated
MethodCapture-based next-generation sequencing
Wet AssayYes
Sample ID-
Sample NameFFPE-1018/32
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameNon Hodgkin Lymphoma
Disease AbbreviationNHL
CancerYes
Literature
PubMed ID39026081
JournalBritish Journal of Cancer
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandq41
Human Strand
Human Integration Location Typeintergenic
Hg19 Start218811082
Hg19 End218811154
Hg38 Start218637740
Hg38 End218637812
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneENSG00000307248
Distance4716
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameGenotype C
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1385
Virus Breakpoint2468
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-