Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20000096

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20000096
Fusion NameHPV-chr20:p12.1 integration
ValidatedYes
Curated WayVISDB1.0
MethodPCR and Sanger sequencing
Wet AssayYes
Sample IDT38
Sample NameT38
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID26735580
JournalOncotarget
Published Year2016
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr20
Cytogenetic Bandp12.1
Human Strand
Human Integration Location TypeIntronic
Hg19 Start14872325
Hg19 End14872325
Hg38 Start14891679
Hg38 End14891679
Junction Sequence-
Target Gene
Target GeneMACROD2-AS1, MACROD2
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionNC_001526.4
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16, complete genome
Virus Genome Length7906
Virus Breakpoint11987
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeE1
Integrated Virus SequenceAACGATGGAGACTCTTTGCCAACGTTTAAATGTGTGTCAGGACAAAATACTAACACATTATGAAAATGATAGTACAGACCTACGTGACCATATAGACTAT| |TGGAAACACATGCGCCTAGAATGTGCTATTTATTACAAGGCCAGAGAAATGGGATTTAAACATATTAACCACCAGGTGGTGCCAACACTGGCTGTATCAA
ViMIC ID-