| Basic Information ▼ | |
| VISDB ID | TVIS20000125 |
|---|---|
| Fusion Name | HPV-NELFE integration |
| Validated | Yes |
| Curated Way | VISDB1.0 |
| Method | PCR and Sanger sequencing |
| Wet Assay | Yes |
| Sample ID | T47 |
| Sample Name | T47 |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▼ | |
| Disease Name | Cervical carcinoma |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▼ | |
| PubMed ID | 26735580 |
| Journal | Oncotarget |
| Published Year | 2016 |
| Human Genome ▼ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr6 |
| Cytogenetic Band | p21.33 |
| Human Strand | |
| Human Integration Location Type | Intronic |
| Hg19 Start | 31923670 |
| Hg19 End | 31923670 |
| Hg38 Start | 31955893 |
| Hg38 End | 31955893 |
| Junction Sequence | - |
| Target Gene ▼ | |
| Target Gene | NELFE |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▼ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_001526.4 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 16, complete genome |
| Virus Genome Length | 7906 |
| Virus Breakpoint1 | 3800 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | E2 |
| Integrated Virus Sequence | AAGAAACTAGTTTTATTGATGCTGGTGCACCAACATCTGTACCTTCCATTCCCCCAGATGTATCAGGATTTAGTATTACTACTTCAACTGATACCACACC| |TGCTATATTAGATATTAATAATACTGTTACTACTGTTACTACACATAATAATCCCACTTTCACTGACCCATCTGTATTGCAGCCTCCAACACCTGCAGAA |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D