Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20000256

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20000256
Fusion NameHPV-FAM157A integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh-throughput Viral Integration Detection method
Wet AssayNo
Sample IDT6008
Sample NameT6008
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameNot given
Disease Abbreviation-
Cancer-
Literature
PubMed ID25581428
JournalNature Genetics
Published Year2015
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandq29
Human Strand
Human Integration Location TypeIntronic
Hg19 Start197900757
Hg19 End197900757
Hg38 Start198173886
Hg38 End198173886
Junction Sequence-
Target Gene
Target GeneENSG00000290937, ENSG00000301547
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype Name-
Virus Genome AccessionNC_001526.2;AY262282.1;HQ537687.1
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length0
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-