Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20001323

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20001323
Fusion NameHPV-LY86-AS1 integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh-throughput Viral Integration Detection method
Wet AssayNo
Sample IDT3157
Sample NameT3157
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameNot given
Disease Abbreviation-
Cancer-
Literature
PubMed ID25581428
JournalNature Genetics
Published Year2015
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandp25.1
Human Strand
Human Integration Location TypeIntronic
Hg19 Start6503263
Hg19 End6503263
Hg38 Start6503030
Hg38 End6503030
Junction Sequence-
Target Gene
Target GeneENSG00000285717, LY86-AS1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype Name-
Virus Genome AccessionNC_001526.2;HQ537777.1
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length0
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-