Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20003894

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20003894
Fusion NameHPV-CSMD1 integration
ValidatedNo
Curated WayVISDB1.0
Methodde novo assembly of RNA-seq reads
Wet AssayNo
Sample IDUM-P15
Sample NameUM-P15
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHead and neck squamous cell carcinoma
Disease AbbreviationHNSCC
CancerYes
Literature
PubMed ID28928286
JournalMol Cancer Res
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr8
Cytogenetic Bandp23.2
Human Strand
Human Integration Location TypeExon49
Hg19 Start2944617
Hg19 End2944617
Hg38 Start3087095
Hg38 End3087095
Junction Sequence-
Target Gene
Target GeneCSMD1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionNot given
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length7937
Virus Breakpoint1823
Virus Breakpoint2-
Virus Gene NameL1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-