| Basic Information ▶ | |
| VISDB ID | TVIS20003977 |
|---|---|
| Fusion Name | HPV-chr21:q22.3 integration |
| Validated | No |
| Curated Way | VISDB1.0 |
| Method | de novo assembly of RNA-seq reads |
| Wet Assay | No |
| Sample ID | TCGA-CN-A6V1 |
| Sample Name | TCGA-CN-A6V1 |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 28928286 |
| Journal | Mol Cancer Res |
| Published Year | 2018 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr21 |
| Cytogenetic Band | q22.3 |
| Human Strand | |
| Human Integration Location Type | Intergenic |
| Hg19 Start | 46418875 |
| Hg19 End | 46418875 |
| Hg38 Start | 44998961 |
| Hg38 End | 44998961 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | - |
| Nearby Gene | PICSAR |
| Distance | 179 |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | Not given |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | - |
| Virus Genome Length | 7937 |
| Virus Breakpoint1 | 943 |
| Virus Breakpoint2 | - |
| Virus Gene Name | E1 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D