Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20004005

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20004005
Fusion NameHPV-LOC107984299 integration
ValidatedNo
Curated WayVISDB1.0
Methodde novo assembly of RNA-seq reads
Wet AssayNo
Sample IDUM-P16
Sample NameUM-P16
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHead and neck squamous cell carcinoma
Disease AbbreviationHNSCC
CancerYes
Literature
PubMed ID28928286
JournalMol Cancer Res
Published Year2018
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandp15.5
Human Strand
Human Integration Location TypeIntronic
Hg19 Start1865946
Hg19 End1865946
Hg38 Start1844716
Hg38 End1844716
Junction Sequence-
Target Gene
Target GeneENSG00000299209
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionNot given
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length7937
Virus Breakpoint1729
Virus Breakpoint2-
Virus Gene NameE1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-