Basic Information ▼ | |
VISDB ID | TVIS20004030 |
---|---|
Fusion Name | HPV-chr19:p13.2 integration |
Validated | No |
Curated Way | VISDB1.0 |
Method | de novo assembly of RNA-seq reads |
Wet Assay | No |
Sample ID | TCGA-CV-5442 |
Sample Name | TCGA-CV-5442 |
Sample Type | Tumor |
Age | - |
Gender | - |
Disease Information ▼ | |
Disease Name | Head and neck squamous cell carcinoma |
Disease Abbreviation | HNSCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 28928286 |
Journal | Mol Cancer Res |
Published Year | 2018 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr19 |
Cytogenetic Band | p13.2 |
Human Strand | |
Human Integration Location Type | Intergenic |
Hg19 Start | 9331192 |
Hg19 End | 9331192 |
Hg38 Start | 9220516 |
Hg38 End | 9220516 |
Junction Sequence | - |
Target Gene ▼ | |
Target Gene | - |
Nearby Gene | OR7D4 |
Distance | 927 |
Virus Information ▼ | |
Virus Name | Human Papillomavirus |
Virus Subtype Name | HPV16 |
Virus Genome Accession | Not given |
TaxonomyID | 10566 |
Virus Abbreviation | HPV |
Virus Genome | - |
Virus Genome Length | 7937 |
Virus Breakpoint1 | 1323 |
Virus Breakpoint2 | - |
Virus Gene Name | E2 |
Virus Region Type | - |
Integrated Virus Sequence | - |
ViMIC ID | - |