Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20004257

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20004257
Fusion NameHPV-chr21:q22.3 integration
ValidatedYes
Curated WayVISDB1.0
MethodWhole genome, RNA, Whole-Exome sequencing and PCR
Wet AssayYes
Sample IDTCGA-CR-7385
Sample NameTCGA-CR-7385
Sample TypeTumor
Age42
Gender-
Disease Information
Disease NameHead and neck squamous cell carcinoma
Disease AbbreviationHNSCC
CancerYes
Literature
PubMed ID25313082
JournalProc Natl Acad Sci U S A
Published Year2014
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr21
Cytogenetic Bandq22.3
Human Strand
Human Integration Location Type-
Hg19 Start43067884
Hg19 End43067884
Hg38 Start41647724
Hg38 End41647724
Junction Sequence-
Target Gene
Target GeneENSG00000296085
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAY686584
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate Qv17722E, complete genome
Virus Genome Length7906
Virus Breakpoint12219
Virus Breakpoint2-
Virus Gene NameE1
Virus Region Type-
Integrated Virus SequenceAAATGAGTATGAGTCAATGGATAAAATATAGATGTGATAGGGTAGATGATGGAGGTGATTGGAAGCAAATTGTTATGTTTTTAAGGTATCAAGGTGTAGA| |GTTTATGTCATTTTTAACTGCATTAAAAAGATTTTTGCAAGGCATACCTAAAAAAAATTGCATATTACTATATGGTGCAGCTAACACAGGTAAATCATTA
ViMIC ID-