Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20004476

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20004476
Fusion NameHPV-CASZ1 integration
ValidatedYes
Curated WayVISDB1.0
MethodMultiplex RT-PCR, APOT assay
Wet AssayYes
Sample IDT2319
Sample NameT2319
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID23824673
Journal PLoS One
Published Year2014
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp36.22
Human Strand
Human Integration Location TypeIntronic
Hg19 Start10697545
Hg19 End10697545
Hg38 Start10637488
Hg38 End10637488
Junction Sequence-
Target Gene
Target GeneCASZ1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionK02718
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 (HPV16), complete genome
Virus Genome Length7904
Virus Breakpoint1910
Virus Breakpoint2-
Virus Gene NameE1
Virus Region Type-
Integrated Virus SequenceAAGACCTGTTAATGGGCACACTAGGAATTGTGTGCCCCATC TGTTCTCAGAAACCATAATCTACCATGGCTGATCCTGCAGGTACCAATGGGGAAGAGG| |GTACGGGATGTA ATGGATGGTTTTATGTAGAGGCTGTAGTGGAAAAAAAAACAGGGGATGCTATATCAGATGACGAGAACGA AAATGACAGTGATACA
ViMIC ID-