Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20004514

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20004514
Fusion NameHPV-USP6NL integration
ValidatedYes
Curated WayVISDB1.0
MethodMultiplex RT-PCR, APOT assay
Wet AssayYes
Sample ID1676
Sample Name1676
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID23824673
Journal PLoS One
Published Year2014
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr10
Cytogenetic Bandp14
Human Strand
Human Integration Location TypeIntronic
Hg19 Start11742450
Hg19 End11742450
Hg38 Start11700451
Hg38 End11700451
Junction Sequence-
Target Gene
Target GeneENSG00000308333, ENSG00000308311
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionK02718
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 (HPV16), complete genome
Virus Genome Length7904
Virus Breakpoint11973
Virus Breakpoint2-
Virus Gene NameE1
Virus Region Type-
Integrated Virus SequenceATTAGTGAAGTGTATGGAGACACGCCAGAATGGATACAAAGAC AAACAGTATTACAACATAGTTTTAATGATTGTACATTTGAATTATCACAGATGGTA| |CAATGGGCCTACGA TAATGACATAGTAGACGATAGTGAAATTGCATATAAATATGCACAATTGGCAGACACTAATAGTAATGCA AGTGCCTTTCTAAA
ViMIC ID-