| Basic Information ▶ | |
| VISDB ID | TVIS20004558 |
|---|---|
| Fusion Name | HPV-chrX:q27.3 integration |
| Validated | Yes |
| Curated Way | VISDB1.0 |
| Method | FISH, WGS, RNA-seq, qPCR |
| Wet Assay | Yes |
| Sample ID | Caski |
| Sample Name | Caski |
| Sample Type | Cell line |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Cervical carcinoma |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 24201445 |
| Journal | Genome Research |
| Published Year | 2014 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chrX |
| Cytogenetic Band | q27.3 |
| Human Strand | |
| Human Integration Location Type | - |
| Hg19 Start | 144778296 |
| Hg19 End | 144778324 |
| Hg38 Start | 145696778 |
| Hg38 End | 145696806 |
| Junction Sequence | AGCTCAATTTGGAAGAAAAGAACCAGTG |
| Target Gene ▶ | |
| Target Gene | ENSG00000286085 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_001526.2 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 16, complete genome |
| Virus Genome Length | 7905 |
| Virus Breakpoint1 | 950 |
| Virus Breakpoint2 | 975 |
| Virus Gene Name | E1 |
| Virus Region Type | - |
| Integrated Virus Sequence | AGGGGATGCTATATCAGATGACGAGA |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D