| Basic Information ▶ | |
| VISDB ID | TVIS20004603 |
|---|---|
| Fusion Name | HPV-chr9:q22.33 integration |
| Validated | Yes |
| Curated Way | VISDB1.0 |
| Method | FISH, WGS, RNA-seq, qPCR |
| Wet Assay | Yes |
| Sample ID | UPCI-SCC090 |
| Sample Name | UPCI-SCC090 |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Cervical carcinoma |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 24201445 |
| Journal | Genome Research |
| Published Year | 2014 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr9 |
| Cytogenetic Band | q22.33 |
| Human Strand | |
| Human Integration Location Type | - |
| Hg19 Start | 100707913 |
| Hg19 End | 100707995 |
| Hg38 Start | 97945631 |
| Hg38 End | 97945713 |
| Junction Sequence | gatggtttccagcttcatccacttccctgcaaaggacgtgaactcatccttttttatggctgcatagtattccatggcatat |
| Target Gene ▶ | |
| Target Gene | - |
| Nearby Gene | HEMGN |
| Distance | 776 |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_001526.2 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 16, complete genome |
| Virus Genome Length | 7905 |
| Virus Breakpoint1 | 279 |
| Virus Breakpoint2 | 317 |
| Virus Gene Name | E6 |
| Virus Region Type | - |
| Integrated Virus Sequence | ATATGCTGTATGTGATAAATGTTTAAAGTTTTATTCTAA |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D