Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20004654

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20004654
Fusion NameHPV-chr5:q11.2 integration
ValidatedYes
Curated WayVISDB1.0
MethodFISH, WGS, RNA-seq, qPCR
Wet AssayYes
Sample IDTumor A
Sample NameTumor A
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID24201445
JournalGenome Research
Published Year2014
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandq11.2
Human Strand
Human Integration Location Type-
Hg19 Start56751290
Hg19 End56751263
Hg38 Start57455436
Hg38 End57455463
Junction Sequencegaaaggtaaagtaactttctaagttac
Target Gene
Target GeneRMEL3
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV18
Virus Genome AccessionNC_001357.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus - 18, complete genome
Virus Genome Length7857
Virus Breakpoint17390
Virus Breakpoint27421
Virus Gene Name-
Virus Region TypeLCR
Integrated Virus SequenceTTCAAGTTATAAAACTGCACACCTTACAGCAT
ViMIC ID-