Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20004783

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20004783
Fusion NameHPV-chr4:q28 integration
ValidatedYes
Curated WayVISDB1.0
MethodAPOT and PCR
Wet AssayYes
Sample IDBiopsy specimens
Sample NameBiopsy specimens
Sample TypeTumor
Age67
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID20055874
JournalClin Exp Dermatol
Published Year2009
Human Genome
Human Genome Version DescriptionUnknown
Human Genome RefSeq Accession
Human Chromosomechr4
Cytogenetic Bandq28
Human Strand
Human Integration Location Type-
Hg19 Start-
Hg19 End-
Hg38 Start-
Hg38 End-
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionNot given
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length7937
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene NameE1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-