Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20004859

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20004859
Fusion NameHPV-RASSF6 integration
ValidatedYes
Curated WayVISDB1.0
MethodRestriction site PCR
Wet AssayYes
Sample IDCervical cell and sample
Sample NameCervical cell and sample
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID18922896
JournalCancer Res
Published Year2008
Human Genome
Human Genome Version DescriptionUnknown
Human Genome RefSeq Accession
Human Chromosomechr4
Cytogenetic Bandq13.3
Human Strand
Human Integration Location TypeIntronic
Hg19 Start74699517
Hg19 End74699623
Hg38 Start-
Hg38 End-
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionNot given
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length7937
Virus Breakpoint13690
Virus Breakpoint23641
Virus Gene NameE2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-