| Basic Information ▶ | |
| VISDB ID | TVIS20005073 |
|---|---|
| Fusion Name | HPV-RARA integration |
| Validated | Yes |
| Curated Way | VISDB1.0 |
| Method | RNA-Seq+RT-PCR |
| Wet Assay | Yes |
| Sample ID | SGCX-NOR-037 |
| Sample Name | SGCX-NOR-037 |
| Sample Type | Tumor |
| Age | 29 |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Squamous-cell carcinoma |
| Disease Abbreviation | SCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 24390348 |
| Journal | Nature |
| Published Year | 2014 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr17 |
| Cytogenetic Band | q21.2 |
| Human Strand | |
| Human Integration Location Type | Intronic |
| Hg19 Start | 38465538 |
| Hg19 End | 38487281 |
| Hg38 Start | 40309286 |
| Hg38 End | 40331029 |
| Junction Sequence | GTAGGACCATGCACACCCCTTCCCAATTCTTTGGCCGCCTTTGACCCCGGCCTCTGCTTCTGATCTAGCCATTTCCTTCTCGCCAGTTCTGGCTTTCCCCATCCCTCCTCTCCCGTCGCTCACTGTAGTCCTGGGAGGTGGGAGCCTGGGAACAGTGGGGTGTCTGAAAGCTCAGAGCCCTCTGCACCCTCCAGCACCCTTCCTGCATTTCTCCTGAGGCAGTTCCCGTTCTCTAGATAAGAGTGGGGAGTAGGG |
| Target Gene ▶ | |
| Target Gene | RARA, ENSG00000287644 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | HQ644271.1 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 16 isolate Qv13956, complete genome |
| Virus Genome Length | 7906 |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D