| Basic Information ▶ | |
| VISDB ID | TVIS20005277 |
|---|---|
| Fusion Name | HPV-SEC16A integration |
| Validated | Yes |
| Curated Way | ViMIC |
| Method | Bioinformatic analysis of Whole genome and RNA sequencing data using VIcaller pipeline; PCR and Sanger sequencing validation |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | TCGA-FD-A3B4 |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Bladder cancer |
| Disease Abbreviation | BC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 30872350 |
| Journal | Genome Research |
| Published Year | 2019 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr9 |
| Cytogenetic Band | q34.3 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 139375582 |
| Hg19 End | 139375583 |
| Hg38 Start | 136481130 |
| Hg38 End | 136481131 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | SEC16A |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV56 |
| Virus Genome Accession | X74483.1 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 56 genomic DNA |
| Virus Genome Length | 7844 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 5100006 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D