Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20007037

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20007037
Fusion NameHPV-ENSG00000260661 integration
ValidatedNo
Curated WayViMIC
MethodNanopore squencing
Wet AssayYes
Sample ID-
Sample NamePatient 1
Sample TypeTumor
Age56
Gender-
Disease Information
Disease NameSquamous cell carcinoma
Disease AbbreviationSCC
CancerYes
Literature
PubMed ID32714374
JournalFrontiers in Genetics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr15
Cytogenetic Bandq26.1
Human Strand
Human Integration Location Typeintronic
Hg19 Start92744672
Hg19 End92744673
Hg38 Start92201442
Hg38 End92201443
Junction Sequence-
Target Gene
Target GeneENSG00000260661
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionNC_001526.2
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16, complete genome
Virus Genome Length7905 bp
Virus Breakpoint12345
Virus Breakpoint2-
Virus Gene NameE1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5201756