| Basic Information ▶ | |
| VISDB ID | TVIS20007108 |
|---|---|
| Fusion Name | HPV-USH2A-AS1 integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | Nanopore squencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | Patient 1 |
| Sample Type | Tumor |
| Age | 56 |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Squamous cell carcinoma |
| Disease Abbreviation | SCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 32714374 |
| Journal | Frontiers in Genetics |
| Published Year | 2020 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr1 |
| Cytogenetic Band | q41 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 216397027 |
| Hg19 End | 216397028 |
| Hg38 Start | 216223685 |
| Hg38 End | 216223686 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | USH2A-AS1, USH2A |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_001526.2 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 16, complete genome |
| Virus Genome Length | 7905 bp |
| Virus Breakpoint1 | 6809 |
| Virus Breakpoint2 | - |
| Virus Gene Name | L1 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 5201827 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D