Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20007365

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20007365
Fusion NameHPV-FHIT integration
ValidatedNo
Curated WayViMIC
MethodHPV double capture method
Wet AssayYes
Sample ID-
Sample NameR269
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33191407
JournalBritish Journal of Cancer
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandp14.2
Human Strand
Human Integration Location Typeintronic
Hg19 Start60607350
Hg19 End60607351
Hg38 Start60621617
Hg38 End60621618
Junction Sequence-
Target Gene
Target GeneFHIT
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome Accession-
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5300067