Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20007662

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20007662
Fusion NameHPV-MIPOL1 integration
ValidatedNo
Curated WayViMIC
MethodHPV double capture method
Wet AssayYes
Sample ID-
Sample NameR377
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33191407
JournalBritish Journal of Cancer
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr14
Cytogenetic Bandq21.1
Human Strand
Human Integration Location Typeintronic
Hg19 Start37886925
Hg19 End37886926
Hg38 Start37417720
Hg38 End37417721
Junction Sequence-
Target Gene
Target GeneMIPOL1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome Accession-
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5300364