Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20007737

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20007737
Fusion NameHPV-PRRC2C integration
ValidatedNo
Curated WayViMIC
MethodHPV double capture method
Wet AssayYes
Sample ID-
Sample NameR344
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33191407
JournalBritish Journal of Cancer
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandq24.3
Human Strand
Human Integration Location Typeintronic
Hg19 Start171560468
Hg19 End171560469
Hg38 Start171591329
Hg38 End171591330
Junction Sequence-
Target Gene
Target GenePRRC2C
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV45
Virus Genome Accession-
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5300444