Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20007863

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20007863
Fusion NameHPV-RFLNA integration
ValidatedNo
Curated WayViMIC
MethodHPV probe capture sequencing
Wet AssayYes
Sample ID-
Sample NameCC-H003
Sample TypeTumor
Age49
GenderFemale
Disease Information
Disease NameSquamous cell carcinoma
Disease AbbreviationSCC
CancerYes
Literature
PubMed ID30567904
JournalJournal of medical genetics
Published Year2019
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandq24.31
Human Strand
Human Integration Location Typeintronic
Hg19 Start124794321
Hg19 End-
Hg38 Start124309775
Hg38 End124309776
Junction Sequence-
Target Gene
Target GeneRFLNA
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome Accession-
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint12538
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5400011