Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20007895

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20007895
Fusion NameHPV-FAM230D integration
ValidatedNo
Curated WayViMIC
MethodHPV probe capture sequencing
Wet AssayYes
Sample ID-
Sample NameCC-H006
Sample TypeTumor
Age46
GenderFemale
Disease Information
Disease NameSquamous cell carcinoma
Disease AbbreviationSCC
CancerYes
Literature
PubMed ID30567904
JournalJournal of medical genetics
Published Year2019
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr22
Cytogenetic Bandq11.21
Human Strand
Human Integration Location Typeintronic
Hg19 Start133841897
Hg19 End-
Hg38 Start18200705
Hg38 End18200706
Junction Sequence-
Target Gene
Target GeneFAM230D
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome Accession-
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint14867
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5400045