Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20009800

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20009800
Fusion NameHPV-MIR924HG integration
ValidatedNo
Curated WayViMIC
MethodHPV probe capture sequencing
Wet AssayYes
Sample ID-
Sample NameNO.27CIN
Sample TypeTumor
Age-
GenderFemale
Disease Information
Disease NameCIN1
Disease Abbreviation-
CancerYes
Literature
PubMed ID30567904
JournalJournal of medical genetics
Published Year2019
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr18
Cytogenetic Bandq12.2
Human Strand
Human Integration Location Typeintronic
Hg19 Start36784881
Hg19 End-
Hg38 Start39204917
Hg38 End39204918
Junction Sequence-
Target Gene
Target GeneMIR924HG
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV33
Virus Genome Accession-
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1467
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5401952