Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20010193

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20010193
Fusion NameHPV-SYNE3 integration
ValidatedNo
Curated WayViMIC
MethodHPV probe capture sequencing
Wet AssayYes
Sample ID-
Sample NameNO.26CIN
Sample TypeTumor
Age-
GenderFemale
Disease Information
Disease NameCIN2-3
Disease Abbreviation-
CancerYes
Literature
PubMed ID30567904
JournalJournal of medical genetics
Published Year2019
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr14
Cytogenetic Bandq32.13
Human Strand
Human Integration Location Typeexonic
Hg19 Start95910587
Hg19 End-
Hg38 Start95444250
Hg38 End95444251
Junction Sequence-
Target Gene
Target GeneSYNE3
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome Accession-
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1437
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5402345