| Basic Information ▶ | |
| VISDB ID | TVIS20010556 |
|---|---|
| Fusion Name | HPV-LINC00680 integration |
| Validated | Yes |
| Curated Way | ViMIC |
| Method | Detection of integrated papillomavirus sequences-PCR |
| Wet Assay | Yes |
| Sample ID | #NAME? |
| Sample Name | T-033 |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Cervical carcinoma |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 29487700 |
| Journal | Oncotarget |
| Published Year | 2018 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr6 |
| Cytogenetic Band | p11.2 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 58281510 |
| Hg19 End | 58281511 |
| Hg38 Start | 57955232 |
| Hg38 End | 57955233 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | LINC00680 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | - |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | 1104 |
| Virus Breakpoint2 | - |
| Virus Gene Name | E1 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 5402711 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D