Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20010667

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20010667
Fusion NameHPV-chr1:117704784 integration
ValidatedNo
Curated WayViMIC
MethodProbe-capture and next-generation sequencing
Wet AssayYes
Sample ID#NAME?
Sample NameNot given
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameProstate cancer
Disease AbbreviationPCa
CancerYes
Literature
PubMed ID30794288
JournalCarcinogenesis
Published Year2019
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp12
Human Strand
Human Integration Location Typeintergenic
Hg19 Start118247406
Hg19 End118247407
Hg38 Start117704784
Hg38 End117704785
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneENSG00000298597
Distance3915
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV18
Virus Genome Accession-
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint15307
Virus Breakpoint2-
Virus Gene NameCDS of L2 gene
Virus Region Type-
Integrated Virus SequenceAGTATCTGCCACGGAGGACAATGACTTGTTTGATATATATGCAGATGACAT
ViMIC ID5402822