| Basic Information ▶ | |
| VISDB ID | TVIS20010677 |
|---|---|
| Fusion Name | HPV-chr1:9485376 integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | HPV DNA Capture using the NimbleGen Array |
| Wet Assay | Yes |
| Sample ID | #NAME? |
| Sample Name | Not given |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Adenocarcinoma |
| Disease Abbreviation | AC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 32631904 |
| Journal | Cancer Research |
| Published Year | 2020 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr1 |
| Cytogenetic Band | p36.22 |
| Human Strand | |
| Human Integration Location Type | intergenic |
| Hg19 Start | 9545435 |
| Hg19 End | 9545436 |
| Hg38 Start | 9485376 |
| Hg38 End | 9485377 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | - |
| Nearby Gene | ENSG00000296249 |
| Distance | 4966 |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | MT316298.1 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus 16 isolate DL0041232, partial genome |
| Virus Genome Length | 7906 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 5402832 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D