| Basic Information ▶ | |
| VISDB ID | TVIS20010695 |
|---|---|
| Fusion Name | HPV-ENSG00000267610 integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | HPV genotyping |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | Not given |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Squamous-cell carcinoma |
| Disease Abbreviation | SCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 30264502 |
| Journal | Genes, Chromosomes and Cancer |
| Published Year | 2018 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr19 |
| Cytogenetic Band | p13.13 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 13127367 |
| Hg19 End | 13215876 |
| Hg38 Start | 13016553 |
| Hg38 End | 13105062 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | ENSG00000267610, ENSG00000279044, LYL1, ENSG00000304024, NFIX, TRMT1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV20 |
| Virus Genome Accession | NC_001526.2 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 16, complete genome |
| Virus Genome Length | 7905 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 5402850 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D