| Basic Information ▶ | |
| VISDB ID | TVIS20010738 |
|---|---|
| Fusion Name | HPV-ROM1 integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | Double-capture preparation and sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | B1 |
| Sample Type | High-grade squamous intraepithelial lesions |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Cervical carcinoma |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 30728408 |
| Journal | Scientific reports |
| Published Year | 2019 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr11 |
| Cytogenetic Band | q12.3 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 62609491 |
| Hg38 End | 62678847 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | ROM1, ENSG00000304832, C11orf98, CSKMT, SNORA57, UQCC3, UBXN1, EML3, B3GAT3, GANAB, LBHD1, INTS5, ENSG00000255432 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | - |
| Virus Genome Accession | - |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 5402893 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D