| Basic Information ▶ | |
| VISDB ID | TVIS20010743 |
|---|---|
| Fusion Name | HPV-ENSG00000231922 integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | Double-capture preparation and sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | C9 |
| Sample Type | High-grade squamous intraepithelial lesions |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Cervical carcinoma |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 30728408 |
| Journal | Scientific reports |
| Published Year | 2019 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr14 |
| Cytogenetic Band | q22.2,q22.3 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 53825501 |
| Hg38 End | 55712832 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | ENSG00000231922, MIR5580, ENSG00000287156, ATP5F1CP1, ENSG00000297446, ENSG00000306082, ENSG00000258753, ENSG00000307190, RNU6ATAC9P, MIR4308, FDPSP3, ENSG00000304580, ENSG00000305238, RPSAP13, ENSG00000289523, ENSG00000304907, ENSG00000279392, ENSG00000299807, COX5AP1, ENSG00000239686, Metazoa_SRP, CHMP4BP1, HMGN1P1, RPL21P6, RPL7AP4, ABI1P1, Y_RNA, BMP4, ENSG00000300222, CDKN3, CNIH1, GMFB, ENSG00000295290, SAMD4A-AS1, GCH1, WDHD1, SOCS4, MAPK1IP1L, LGALS3, ENSG00000293989, ENSG00000258050, ENSG00000299791, FBXO34-AS1, ENSG00000258455, ATG14, ENSG00000300954, ENSG00000296983, LINC02331, ENSG00000295303, ENSG00000297427, ENSG00000300202, SAMD4A, ENSG00000307927, DLGAP5, FBXO34, TBPL2, DDHD1-DT, CGRRF1, KTN1-AS1, KTN1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | - |
| Virus Genome Accession | - |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 5402898 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D