| Basic Information ▶ | |
| VISDB ID | TVIS20010787 |
|---|---|
| Fusion Name | HPV-RN7SL393P integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | CaptHPV-NGS assays |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | Not given |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Vulvar Carcinoma |
| Disease Abbreviation | VSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 31860576 |
| Journal | Journal of Lower Genital Tract Disease |
| Published Year | 2020 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr2 |
| Cytogenetic Band | q24.1,q24.2 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 158443071 |
| Hg38 End | 159443032 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | RN7SL393P, ENSG00000289488, RPL7AP22, ENSG00000231675, OR7E89P, OR7E28P, RNU2-21P, ENSG00000307237, ENSG00000305402, BTF3L4P2, RNU6-580P, GSTM3P2, MIR6888, ENSG00000300514, OR7E90P, ENSG00000296615, ENSG00000223642, PKP4, PKP4-AS1, ENSG00000228586, DAPL1, ENSG00000286621, TANC1, WDSUB1, CCDC148, BAZ2B |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | - |
| Virus Genome Accession | - |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 5402942 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D