Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20010826

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20010826
Fusion NameHPV-chrY:15883032 integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameLSIL-1
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human ChromosomechrY
Cytogenetic Bandq11.221
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start17994912
Hg19 End17994913
Hg38 Start15883032
Hg38 End15883033
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV55
Virus Genome AccessionU31791.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 55, complete genome
Virus Genome Length7822 bp
Virus Breakpoint15513
Virus Breakpoint25647
Virus Gene NameHpV55gp6_L2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5402981