Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20010912

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20010912
Fusion NameHPV-chr21:22196780 integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameLSIL-2
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr21
Cytogenetic Bandq21.1
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start23569099
Hg19 End23569100
Hg38 Start22196780
Hg38 End22196781
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneENSG00000226043
Distance3860
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV16
Virus Genome AccessionAF534061.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint17610
Virus Breakpoint27744
Virus Gene NameHpV16gp8_L1//downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5403067