Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20011116

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20011116
Fusion NameHPV-LINC02397 integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameLSIL-2
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandq22
Human Strand+
Human Integration Location Typeexonic
Hg19 Start92885386
Hg19 End92885387
Hg38 Start92491610
Hg38 End92491611
Junction Sequence-
Target Gene
Target GeneLINC02397, ENSG00000310529
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV16
Virus Genome AccessionAF534061.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint1922
Virus Breakpoint21056
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5403271