Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20011242

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20011242
Fusion NameHPV-CLEC2D integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameHSIL-1
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandp13.31
Human Strand+
Human Integration Location Typeintronic
Hg19 Start9830337
Hg19 End9830338
Hg38 Start9677741
Hg38 End9677742
Junction Sequence-
Target Gene
Target GeneCLEC2D
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV16
Virus Genome AccessionNC_001526.4
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16, complete genome
Virus Genome Length7906 bp
Virus Breakpoint16242
Virus Breakpoint26376
Virus Gene NameHpV16gp7_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5403397