| Basic Information ▶ | |
| VISDB ID | TVIS20011297 |
|---|---|
| Fusion Name | HPV-RAPGEF6 integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | High-throughput Viral Integration Detection method |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | HSIL-2 |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Cervical carcinoma |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 33023834 |
| Journal | Journal of Genetics and genomics |
| Published Year | 2020 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr5 |
| Cytogenetic Band | q31.1 |
| Human Strand | - |
| Human Integration Location Type | intronic |
| Hg19 Start | 130851741 |
| Hg19 End | 130851742 |
| Hg38 Start | 131516048 |
| Hg38 End | 131516049 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | RAPGEF6, ENSG00000273217 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HpV70 |
| Virus Genome Accession | KC470286.1 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 70 isolate Qv28219 E6 (E6), E7 (E7), E1 (E1), E2 (E2), E4 (E4), E5 (E5), L2 (L2), and L1 (L1) genes, complete cds |
| Virus Genome Length | 7911 bp |
| Virus Breakpoint1 | 1941 |
| Virus Breakpoint2 | 2075 |
| Virus Gene Name | HpV70gp3_E1 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 5403452 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D