Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20011385

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20011385
Fusion NameHPV-EXOC7 integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameHSIL-3
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandq25.1
Human Strand+
Human Integration Location Typeexonic
Hg19 Start74099326
Hg19 End74099327
Hg38 Start76103245
Hg38 End76103246
Junction Sequence-
Target Gene
Target GeneEXOC7
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV66
Virus Genome AccessionEF177182.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 66 clone Qv35854,completegenome
Virus Genome Length7816 bp
Virus Breakpoint17258
Virus Breakpoint27392
Virus Gene NameHpV66gp7_L1//downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5403540