Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20011618

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20011618
Fusion NameHPV-chr3:114205865 integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameHSIL-4
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandq13.31
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start113924712
Hg19 End113924713
Hg38 Start114205865
Hg38 End114205866
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneENSG00000241490
Distance247
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV16
Virus Genome AccessionNC_001526.4
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16, complete genome
Virus Genome Length7906 bp
Virus Breakpoint11272
Virus Breakpoint21406
Virus Gene NameHpV16gp2_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5403773