Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20011938

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20011938
Fusion NameHPV-ENSG00000309730 integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameSCC-1
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandp23
Human Strand+
Human Integration Location Typeintronic
Hg19 Start13884808
Hg19 End13884809
Hg38 Start13884577
Hg38 End13884578
Junction Sequence-
Target Gene
Target GeneENSG00000309730
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV58
Virus Genome AccessionD90400.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 58 complete genome
Virus Genome Length7824 bp
Virus Breakpoint17215
Virus Breakpoint27349
Virus Gene NameHpV58gp8_L1//downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5404093