Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20011944

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20011944
Fusion NameHPV-ENSG00000287297 integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameSCC-1
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandq27
Human Strand+
Human Integration Location Typeintronic
Hg19 Start168052373
Hg19 End168052374
Hg38 Start167651693
Hg38 End167651694
Junction Sequence-
Target Gene
Target GeneENSG00000287297
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV58
Virus Genome AccessionD90400.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 58 complete genome
Virus Genome Length7824 bp
Virus Breakpoint17215
Virus Breakpoint27349
Virus Gene NameHpV58gp8_L1//downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5404099